IL_6P5J_284

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACAGGAUUGACAG*CUUUCUCGAUUCC

Length

28 nucleotides

Bulged bases

6P5J|1|2|G|1285, 6P5J|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|G|1280
6P5J|1|2|G|1281
6P5J|1|2|A|1282
6P5J|1|2|C|1283
6P5J|1|2|A|1284
6P5J|1|2|G|1285
6P5J|1|2|G|1286
6P5J|1|2|A|1287
6P5J|1|2|U|1288
6P5J|1|2|U|1289
6P5J|1|2|G|1290
6P5J|1|2|A|1291
6P5J|1|2|C|1292
6P5J|1|2|A|1293
6P5J|1|2|G|1294
*
6P5J|1|2|C|1305
6P5J|1|2|U|1306
6P5J|1|2|U|1307
6P5J|1|2|U|1308
6P5J|1|2|C|1309
6P5J|1|2|U|1310
6P5J|1|2|C|1311
6P5J|1|2|G|1312
6P5J|1|2|A|1313
6P5J|1|2|U|1314
6P5J|1|2|U|1315
6P5J|1|2|C|1316
6P5J|1|2|C|1317

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

eS31