3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCA*UAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_002 not in the Motif Atlas
Geometric match to IL_4M4O_001
Geometric discrepancy: 0.1555
The information below is about IL_4M4O_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6P5K|1|2|G|23
6P5K|1|2|C|24
6P5K|1|2|A|25
*
6P5K|1|2|U|649
6P5K|1|2|A|650
6P5K|1|2|U|651

Current chains

Chain 2
18S rRNA

Nearby chains

Chain K
uS4
Chain Y
uS12

Coloring options:


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