IL_6P5K_004

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6P5K|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_004 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3193

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6P5K|1|2|C|37
6P5K|1|2|A|38
6P5K|1|2|A|39
6P5K|1|2|A|40
*
6P5K|1|2|U|514
6P5K|1|2|G|515
6P5K|1|2|A|516
6P5K|1|2|C|517
6P5K|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24