IL_6P5K_011
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGU*AA
- Length
- 6 nucleotides
- Bulged bases
- 6P5K|1|2|G|113, 6P5K|1|2|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_011 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.1479
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6P5K|1|2|U|112
6P5K|1|2|G|113
6P5K|1|2|G|114
6P5K|1|2|U|115
*
6P5K|1|2|A|348
6P5K|1|2|A|349
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain J
- eS8
- Chain M
- uS17
Coloring options: