IL_6P5K_013

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

6P5K|1|2|C|142, 6P5K|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|G|130
6P5K|1|2|A|141
6P5K|1|2|C|142
6P5K|1|2|U|143
6P5K|1|2|U|144
*
6P5K|1|2|A|175
6P5K|1|2|U|176
6P5K|1|2|G|177
6P5K|1|2|C|178
6P5K|1|2|C|179
6P5K|1|2|G|180
6P5K|1|2|A|181
6P5K|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6