IL_6P5K_016
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_016 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.2397
- The information below is about IL_4WFL_001
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6P5K|1|2|C|188
6P5K|1|2|U|189
6P5K|1|2|G|190
6P5K|1|2|A|191
6P5K|1|2|C|192
*
6P5K|1|2|G|207
6P5K|1|2|G|208
6P5K|1|2|A|209
6P5K|1|2|U|210
6P5K|1|2|G|211
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain J
- eS8
Coloring options: