3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAC*GGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_016 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.2397
The information below is about IL_4WFL_001
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6P5K|1|2|C|188
6P5K|1|2|U|189
6P5K|1|2|G|190
6P5K|1|2|A|191
6P5K|1|2|C|192
*
6P5K|1|2|G|207
6P5K|1|2|G|208
6P5K|1|2|A|209
6P5K|1|2|U|210
6P5K|1|2|G|211

Current chains

Chain 2
18S rRNA

Nearby chains

Chain J
eS8

Coloring options:


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