IL_6P5K_022

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6P5K|1|2|U|368, 6P5K|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2547

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6P5K|1|2|U|366
6P5K|1|2|U|367
6P5K|1|2|U|368
6P5K|1|2|C|369
6P5K|1|2|G|370
6P5K|1|2|A|371
*
6P5K|1|2|U|393
6P5K|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

eS8

Chain M

uS17