3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAAAAUUA*UACCGCAGC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5K|1|2|G|807
6P5K|1|2|A|808
6P5K|1|2|A|809
6P5K|1|2|A|810
6P5K|1|2|A|811
6P5K|1|2|A|812
6P5K|1|2|A|813
6P5K|1|2|U|814
6P5K|1|2|U|815
6P5K|1|2|A|816
*
6P5K|1|2|U|848
6P5K|1|2|A|849
6P5K|1|2|C|850
6P5K|1|2|C|851
6P5K|1|2|G|852
6P5K|1|2|C|853
6P5K|1|2|A|854
6P5K|1|2|G|855
6P5K|1|2|C|856

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4
Chain K
uS4
Chain M
uS17
Chain X
uS8

Coloring options:

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