IL_6P5K_040

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|G|807
6P5K|1|2|A|808
6P5K|1|2|A|809
6P5K|1|2|A|810
6P5K|1|2|A|811
6P5K|1|2|A|812
6P5K|1|2|A|813
6P5K|1|2|U|814
6P5K|1|2|U|815
6P5K|1|2|A|816
*
6P5K|1|2|U|848
6P5K|1|2|A|849
6P5K|1|2|C|850
6P5K|1|2|C|851
6P5K|1|2|G|852
6P5K|1|2|C|853
6P5K|1|2|A|854
6P5K|1|2|G|855
6P5K|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8