IL_6P5K_064
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6P5K|1|2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_064 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.365
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
6P5K|1|2|G|1328
6P5K|1|2|U|1329
6P5K|1|2|G|1330
6P5K|1|2|C|1331
6P5K|1|2|A|1332
6P5K|1|2|U|1333
*
6P5K|1|2|A|1498
6P5K|1|2|U|1499
6P5K|1|2|G|1500
6P5K|1|2|C|1501
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
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