IL_6P5K_090
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUC*GU
- Length
- 5 nucleotides
- Bulged bases
- 6P5K|1|5|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_090 not in the Motif Atlas
- Homologous match to IL_8C3A_003
- Geometric discrepancy: 0.169
- The information below is about IL_8C3A_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6P5K|1|5|A|12
6P5K|1|5|U|13
6P5K|1|5|C|14
*
6P5K|1|8|G|143
6P5K|1|8|U|144
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AG
- eL8
- Chain AN
- eL15
- Chain AX
- eL23
Coloring options: