3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUC*GU
Length
5 nucleotides
Bulged bases
6P5K|1|5|U|13
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_090 not in the Motif Atlas
Homologous match to IL_8C3A_003
Geometric discrepancy: 0.169
The information below is about IL_8C3A_003
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6P5K|1|5|A|12
6P5K|1|5|U|13
6P5K|1|5|C|14
*
6P5K|1|8|G|143
6P5K|1|8|U|144

Current chains

Chain 5
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain AG
eL8
Chain AN
eL15
Chain AX
eL23

Coloring options:


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