IL_6P5K_097

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6P5K|1|5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_097 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.3323

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6P5K|1|5|C|125
6P5K|1|5|C|126
*
6P5K|1|5|G|142
6P5K|1|5|C|143
6P5K|1|5|G|144

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

eL8

Chain AN

eL15

Chain AX

eL23

Chain Ah

eL35