3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_105 not in the Motif Atlas
Homologous match to IL_5TBW_015
Geometric discrepancy: 0.0853
The information below is about IL_5TBW_015
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|G|415
6P5K|1|5|U|416
6P5K|1|5|G|417
6P5K|1|5|A|418
6P5K|1|5|A|419
6P5K|1|5|A|420
6P5K|1|5|C|421
*
6P5K|1|8|G|13
6P5K|1|8|U|14
6P5K|1|8|G|15
6P5K|1|8|G|16
6P5K|1|8|A|17
6P5K|1|8|U|18
6P5K|1|8|C|19

Current chains

Chain 5
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain AC
uL4
Chain AP
uL22
Chain Ae
eL32

Coloring options:


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