IL_6P5K_108
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCC*GCGG
- Length
- 7 nucleotides
- Bulged bases
- 6P5K|1|5|C|696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_108 not in the Motif Atlas
- Geometric match to IL_4ZC7_004
- Geometric discrepancy: 0.2211
- The information below is about IL_4ZC7_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6P5K|1|5|C|458
6P5K|1|5|C|459
6P5K|1|5|C|460
*
6P5K|1|5|G|695
6P5K|1|5|C|696
6P5K|1|5|G|697
6P5K|1|5|G|698
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AE
- eL6
- Chain Ar
- eL28
Coloring options: