3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCC*GCGG
Length
7 nucleotides
Bulged bases
6P5K|1|5|C|696
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_108 not in the Motif Atlas
Geometric match to IL_4ZC7_004
Geometric discrepancy: 0.2211
The information below is about IL_4ZC7_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6P5K|1|5|C|458
6P5K|1|5|C|459
6P5K|1|5|C|460
*
6P5K|1|5|G|695
6P5K|1|5|C|696
6P5K|1|5|G|697
6P5K|1|5|G|698

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AE
eL6
Chain Ar
eL28

Coloring options:


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