IL_6P5K_120

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

6P5K|1|5|A|931, 6P5K|1|5|C|933, 6P5K|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|A|732
6P5K|1|5|A|733
6P5K|1|5|G|734
6P5K|1|5|G|735
*
6P5K|1|5|C|927
6P5K|1|5|A|928
6P5K|1|5|G|929
6P5K|1|5|C|930
6P5K|1|5|A|931
6P5K|1|5|G|932
6P5K|1|5|C|933
6P5K|1|5|A|934
6P5K|1|5|G|935
6P5K|1|5|C|936
6P5K|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AM

L14e

Chain AS

eL20