IL_6P5K_122

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_122 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3589

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6P5K|1|5|G|742
6P5K|1|5|G|743
6P5K|1|5|G|744
*
6P5K|1|5|C|919
6P5K|1|5|C|920
6P5K|1|5|A|921
6P5K|1|5|C|922

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AM

L14e

Chain AS

eL20