IL_6P5K_138

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

6P5K|1|5|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_138 not in the Motif Atlas

Geometric match to IL_5J7L_262

Geometric discrepancy: 0.2042

The information below is about IL_5J7L_262

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6P5K|1|5|G|1550
6P5K|1|5|C|1551
*
6P5K|1|5|G|1576
6P5K|1|5|G|1577
6P5K|1|5|U|1578

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AR

eL19

Chain Ap

eL43