IL_6P5K_146

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

6P5K|1|5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_146 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.13

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6P5K|1|5|A|1723
6P5K|1|5|G|1724
6P5K|1|5|U|1725
*
6P5K|1|5|A|1838
6P5K|1|5|U|1839

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

uL30

Chain AT

eL21

Chain Ab

eL29