3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGC*GG
Length
5 nucleotides
Bulged bases
6P5K|1|5|G|1815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_153 not in the Motif Atlas
Homologous match to IL_5TBW_045
Geometric discrepancy: 0.1652
The information below is about IL_5TBW_045
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6P5K|1|5|C|1814
6P5K|1|5|G|1815
6P5K|1|5|C|1816
*
6P5K|1|5|G|1823
6P5K|1|5|G|1824

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AD
uL18
Chain AT
eL21
Chain Ab
eL29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1795 s