3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_157 not in the Motif Atlas
Geometric match to IL_7RQB_037
Geometric discrepancy: 0.1261
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

6P5K|1|5|C|1911
6P5K|1|5|G|1912
6P5K|1|5|C|1913
6P5K|1|5|C|1914
6P5K|1|5|C|1915
6P5K|1|5|G|1916
6P5K|1|5|A|1917
6P5K|1|5|U|1918
*
6P5K|1|5|G|2064
6P5K|1|5|G|2065

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AF
uL30
Chain AO
uL13
Chain AS
eL20
Chain Af
eL33

Coloring options:


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