IL_6P5K_163

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

6P5K|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|U|1957
6P5K|1|5|A|1958
6P5K|1|5|U|1959
6P5K|1|5|A|1960
6P5K|1|5|G|1961
6P5K|1|5|A|1962
6P5K|1|5|C|1963
6P5K|1|5|A|1964
6P5K|1|5|G|1965
6P5K|1|5|C|1966
*
6P5K|1|5|G|2021
6P5K|1|5|C|2022
6P5K|1|5|C|2023
6P5K|1|5|G|2024
6P5K|1|5|A|2025
6P5K|1|5|A|2026

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Am

eL40