IL_6P5K_176

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6P5K|1|5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_176 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.375

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

6P5K|1|5|C|2613
6P5K|1|5|C|2614
*
6P5K|1|5|G|2724
6P5K|1|5|A|2725
6P5K|1|5|G|2726

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain Ag

eL34