IL_6P5K_199

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6P5K|1|5|A|3901, 6P5K|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_199 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1034

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6P5K|1|5|G|3900
6P5K|1|5|A|3901
6P5K|1|5|A|3902
*
6P5K|1|5|U|4558
6P5K|1|5|A|4559
6P5K|1|5|C|4560
6P5K|1|5|C|4561

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AP

uL22