IL_6P5K_203

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AUCG

Length

7 nucleotides

Bulged bases

6P5K|1|5|C|4064

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_203 not in the Motif Atlas

Homologous match to IL_8C3A_101

Geometric discrepancy: 0.4273

The information below is about IL_8C3A_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76273.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

6P5K|1|5|C|3948
6P5K|1|5|A|3949
6P5K|1|5|U|3950
*
6P5K|1|5|A|4062
6P5K|1|5|U|4063
6P5K|1|5|C|4064
6P5K|1|5|G|4065

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AG

eL8

Chain AK

uL1

Chain Ai

eL36