IL_6P5K_205
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAGGUGUAGAAUAA*UACUCU
- Length
- 21 nucleotides
- Bulged bases
- 6P5K|1|5|A|3965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_205 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3215
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6P5K|1|5|A|3952
6P5K|1|5|G|3953
6P5K|1|5|A|3954
6P5K|1|5|G|3955
6P5K|1|5|G|3956
6P5K|1|5|U|3957
6P5K|1|5|G|3958
6P5K|1|5|U|3959
6P5K|1|5|A|3960
6P5K|1|5|G|3961
6P5K|1|5|A|3962
6P5K|1|5|A|3963
6P5K|1|5|U|3964
6P5K|1|5|A|3965
6P5K|1|5|A|3966
*
6P5K|1|5|U|4055
6P5K|1|5|A|4056
6P5K|1|5|C|4057
6P5K|1|5|U|4058
6P5K|1|5|C|4059
6P5K|1|5|U|4060
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain AK
- uL1
Coloring options: