3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GA*UAC
Length
5 nucleotides
Bulged bases
6P5K|1|5|A|4203
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_209 not in the Motif Atlas
Homologous match to IL_8C3A_107
Geometric discrepancy: 0.1234
The information below is about IL_8C3A_107
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6P5K|1|5|G|4191
6P5K|1|5|A|4192
*
6P5K|1|5|U|4202
6P5K|1|5|A|4203
6P5K|1|5|C|4204

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AI
uL16
Chain AT
eL21
Chain Ab
eL29
Chain Ao
eL42

Coloring options:


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