3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UU*AAUG
Length
6 nucleotides
Bulged bases
6P5K|1|5|A|4656, 6P5K|1|5|U|4657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_233 not in the Motif Atlas
Homologous match to IL_5TBW_119
Geometric discrepancy: 0.2595
The information below is about IL_5TBW_119
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_24807.2
Basepair signature
cWW-cWW
Number of instances in this motif group
16

Unit IDs

6P5K|1|5|U|4641
6P5K|1|5|U|4642
*
6P5K|1|5|A|4655
6P5K|1|5|A|4656
6P5K|1|5|U|4657
6P5K|1|5|G|4658

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AR
eL19
Chain Ad
eL31

Coloring options:


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