IL_6P5K_233

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6P5K|1|5|A|4656, 6P5K|1|5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_233 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2595

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5K|1|5|U|4641
6P5K|1|5|U|4642
*
6P5K|1|5|A|4655
6P5K|1|5|A|4656
6P5K|1|5|U|4657
6P5K|1|5|G|4658

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain Ad

eL31