IL_6P5K_236
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 6P5K|1|5|C|4757, 6P5K|1|5|U|4758, 6P5K|1|5|A|4764, 6P5K|1|5|G|4870, 6P5K|1|5|C|4871, 6P5K|1|5|G|4873, 6P5K|1|5|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_236 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.578
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42231.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-cSS-L
- Number of instances in this motif group
- 2
Unit IDs
6P5K|1|5|C|4756
6P5K|1|5|C|4757
6P5K|1|5|U|4758
6P5K|1|5|C|4759
6P5K|1|5|G|4760
6P5K|1|5|G|4761
6P5K|1|5|A|4762
6P5K|1|5|U|4763
6P5K|1|5|A|4764
6P5K|1|5|G|4765
6P5K|1|5|C|4766
*
6P5K|1|5|G|4868
6P5K|1|5|U|4869
6P5K|1|5|G|4870
6P5K|1|5|C|4871
6P5K|1|5|G|4872
6P5K|1|5|G|4873
6P5K|1|5|A|4874
6P5K|1|5|G|4875
6P5K|1|5|A|4876
6P5K|1|5|G|4877
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AE
- eL6
- Chain AH
- uL6
- Chain AM
- L14e
- Chain AO
- uL13
- Chain AS
- eL20
Coloring options: