IL_6P5K_240

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGCGG*CGCCCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|4897
6P5K|1|5|G|4898
6P5K|1|5|G|4899
6P5K|1|5|C|4902
6P5K|1|5|G|4903
6P5K|1|5|G|4904
*
6P5K|1|5|C|4918
6P5K|1|5|G|4919
6P5K|1|5|C|4920
6P5K|1|5|C|4921
6P5K|1|5|C|4922
6P5K|1|5|U|4923

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AM

L14e