3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCA*UC
Length
5 nucleotides
Bulged bases
6P5K|1|5|C|5013
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_246 not in the Motif Atlas
Geometric match to IL_1S03_006
Geometric discrepancy: 0.2669
The information below is about IL_1S03_006
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

6P5K|1|5|G|5012
6P5K|1|5|C|5013
6P5K|1|5|A|5014
*
6P5K|1|5|U|5035
6P5K|1|5|C|5036

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AW
eL24

Coloring options:


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