IL_6P5K_250
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_250 not in the Motif Atlas
- Homologous match to IL_7RQB_113
- Geometric discrepancy: 0.1475
- The information below is about IL_7RQB_113
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_09061.8
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 14
Unit IDs
6P5K|1|7|C|28
6P5K|1|7|C|29
*
6P5K|1|7|G|48
6P5K|1|7|A|49
6P5K|1|7|A|50
6P5K|1|7|G|51
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain AD
- uL18
- Chain AJ
- uL11
Coloring options: