IL_6P5K_257

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCCUCGGU*ACCAAAU

Length

16 nucleotides

Bulged bases

6P5K|1|1|U|6515, 6P5K|1|1|C|6516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|1|A|6511
6P5K|1|1|G|6512
6P5K|1|1|C|6513
6P5K|1|1|C|6514
6P5K|1|1|U|6515
6P5K|1|1|C|6516
6P5K|1|1|G|6517
6P5K|1|1|G|6518
6P5K|1|1|U|6519
*
6P5K|1|1|A|6529
6P5K|1|1|C|6530
6P5K|1|1|C|6531
6P5K|1|1|A|6532
6P5K|1|1|A|6533
6P5K|1|1|A|6534
6P5K|1|1|U|6535

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain G

uS7

Chain a

eS25