IL_6P5K_262

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6P5K|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_262 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.3657

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6P5K|1|2|G|925
6P5K|1|2|A|926
*
6P5K|1|2|U|1015
6P5K|1|2|U|1016
6P5K|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27