IL_6P5K_266

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGU*ACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_266 not in the Motif Atlas

Geometric match to IL_8P9A_400

Geometric discrepancy: 0.3868

The information below is about IL_8P9A_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6P5K|1|2|G|1108
6P5K|1|2|C|1109
6P5K|1|2|G|1110
6P5K|1|2|U|1111
*
6P5K|1|2|A|1122
6P5K|1|2|C|1123
6P5K|1|2|C|1124

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain C

eS1

Chain S

eS17

Chain c

eS27