3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUUGACAG*CUUUCUCGAU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5K|1|2|A|1287
6P5K|1|2|U|1288
6P5K|1|2|U|1289
6P5K|1|2|G|1290
6P5K|1|2|A|1291
6P5K|1|2|C|1292
6P5K|1|2|A|1293
6P5K|1|2|G|1294
*
6P5K|1|2|C|1305
6P5K|1|2|U|1306
6P5K|1|2|U|1307
6P5K|1|2|U|1308
6P5K|1|2|C|1309
6P5K|1|2|U|1310
6P5K|1|2|C|1311
6P5K|1|2|G|1312
6P5K|1|2|A|1313
6P5K|1|2|U|1314

Current chains

Chain 2
18S rRNA

Nearby chains

Chain L
eS10
Chain N
eS12
Chain Q
uS19
Chain e
eS29
Chain g
eS31

Coloring options:

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