IL_6P5K_279

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6P5K|1|5|U|467, 6P5K|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|A|466
6P5K|1|5|U|467
6P5K|1|5|U|468
6P5K|1|5|C|469
6P5K|1|5|A|470
6P5K|1|5|A|471
6P5K|1|5|C|472
*
6P5K|1|5|G|682
6P5K|1|5|C|683
6P5K|1|5|G|684
6P5K|1|5|C|685
6P5K|1|5|A|686
6P5K|1|5|U|687
6P5K|1|5|U|688
6P5K|1|5|U|689

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ar

eL28