IL_6P5K_281

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGGAAGGUGG*UGUUACAGCCCAC

Length

24 nucleotides

Bulged bases

6P5K|1|5|G|748, 6P5K|1|5|C|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|742
6P5K|1|5|G|743
6P5K|1|5|G|744
6P5K|1|5|G|745
6P5K|1|5|A|746
6P5K|1|5|A|747
6P5K|1|5|G|748
6P5K|1|5|G|749
6P5K|1|5|U|750
6P5K|1|5|G|751
6P5K|1|5|G|752
*
6P5K|1|5|U|910
6P5K|1|5|G|911
6P5K|1|5|U|912
6P5K|1|5|U|913
6P5K|1|5|A|914
6P5K|1|5|C|915
6P5K|1|5|A|916
6P5K|1|5|G|917
6P5K|1|5|C|918
6P5K|1|5|C|919
6P5K|1|5|C|920
6P5K|1|5|A|921
6P5K|1|5|C|922

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AM

L14e

Chain AS

eL20