IL_6P5K_286

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6P5K|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_286 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.077

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6P5K|1|5|G|2847
6P5K|1|5|G|2848
6P5K|1|5|A|2849
6P5K|1|5|A|2850
6P5K|1|5|G|2851
6P5K|1|5|U|2852
6P5K|1|5|C|2853
6P5K|1|5|G|2854
6P5K|1|5|G|2855
*
6P5K|1|5|C|3837
6P5K|1|5|U|3838
6P5K|1|5|G|3839
6P5K|1|5|U|3840
6P5K|1|5|C|3841

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AV

uL14