IL_6P5K_288

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGGAG*CGCCGGUGAAAUACCA

Length

22 nucleotides

Bulged bases

6P5K|1|5|A|4046, 6P5K|1|5|A|4047, 6P5K|1|5|U|4049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|U|3968
6P5K|1|5|G|3969
6P5K|1|5|G|3970
6P5K|1|5|G|3971
6P5K|1|5|A|3972
6P5K|1|5|G|3973
*
6P5K|1|5|C|4038
6P5K|1|5|G|4039
6P5K|1|5|C|4040
6P5K|1|5|C|4041
6P5K|1|5|G|4042
6P5K|1|5|G|4043
6P5K|1|5|U|4044
6P5K|1|5|G|4045
6P5K|1|5|A|4046
6P5K|1|5|A|4047
6P5K|1|5|A|4048
6P5K|1|5|U|4049
6P5K|1|5|A|4050
6P5K|1|5|C|4051
6P5K|1|5|C|4052
6P5K|1|5|A|4053

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain AK

uL1