IL_6P5N_002

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_002 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3933

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6P5N|1|1|G|6558
6P5N|1|1|U|6559
6P5N|1|1|A|6560
*
6P5N|1|1|U|6569
6P5N|1|1|U|6570
6P5N|1|1|A|6571
6P5N|1|1|C|6572

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Aq

Eukaryotic peptide chain release factor subunit 1

Chain R

uS9