IL_6P5N_006

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

6P5N|1|2|U|44, 6P5N|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_006 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.1225

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6P5N|1|2|G|41
6P5N|1|2|A|42
6P5N|1|2|U|43
6P5N|1|2|U|44
6P5N|1|2|A|45
6P5N|1|2|A|46
6P5N|1|2|G|47
*
6P5N|1|2|C|479
6P5N|1|2|G|480
6P5N|1|2|C|481

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12