IL_6P5N_042
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_042 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2463
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6P5N|1|2|G|807
6P5N|1|2|A|808
6P5N|1|2|A|809
6P5N|1|2|A|810
6P5N|1|2|A|811
6P5N|1|2|A|812
6P5N|1|2|A|813
6P5N|1|2|U|814
6P5N|1|2|U|815
*
6P5N|1|2|A|849
6P5N|1|2|C|850
6P5N|1|2|C|851
6P5N|1|2|G|852
6P5N|1|2|C|853
6P5N|1|2|A|854
6P5N|1|2|G|855
6P5N|1|2|C|856
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain K
- uS4
- Chain M
- uS17
- Chain X
- uS8
Coloring options: