IL_6P5N_077
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_077 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0846
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6P5N|1|2|G|1702
6P5N|1|2|C|1703
6P5N|1|2|C|1704
6P5N|1|2|C|1705
*
6P5N|1|2|G|1829
6P5N|1|2|U|1830
6P5N|1|2|A|1831
6P5N|1|2|A|1832
6P5N|1|2|C|1833
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- eL41
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
Coloring options: