IL_6P5N_111

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6P5N|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|5|A|466
6P5N|1|5|U|467
6P5N|1|5|U|468
6P5N|1|5|C|469
6P5N|1|5|A|470
6P5N|1|5|A|471
6P5N|1|5|C|472
*
6P5N|1|5|G|682
6P5N|1|5|C|683
6P5N|1|5|G|684
6P5N|1|5|C|685
6P5N|1|5|A|686
6P5N|1|5|U|687
6P5N|1|5|U|688
6P5N|1|5|U|689

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ar

eL28