IL_6P5N_113

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6P5N|1|5|G|666, 6P5N|1|5|A|667, 6P5N|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_113 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1781

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6P5N|1|5|G|487
6P5N|1|5|G|488
*
6P5N|1|5|C|665
6P5N|1|5|G|666
6P5N|1|5|A|667
6P5N|1|5|C|668
6P5N|1|5|C|669

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AQ

eL18

Chain Ar

eL28