IL_6P5N_128

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6P5N|1|5|C|1214, 6P5N|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_128 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.2449

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6P5N|1|5|C|1082
6P5N|1|5|U|1083
6P5N|1|5|C|1084
*
6P5N|1|5|G|1213
6P5N|1|5|C|1214
6P5N|1|5|C|1215
6P5N|1|5|C|1216
6P5N|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

L30

Chain Ab

eL29