IL_6P5N_141

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_141 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1278

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6P5N|1|5|C|1551
6P5N|1|5|G|1552
6P5N|1|5|A|1553
6P5N|1|5|A|1554
6P5N|1|5|G|1555
*
6P5N|1|5|U|1572
6P5N|1|5|G|1573
6P5N|1|5|G|1574
6P5N|1|5|A|1575
6P5N|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AR

eL19

Chain Ap

eL43