IL_6P5N_151
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6P5N|1|5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_151 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.112
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6P5N|1|5|G|1739
6P5N|1|5|C|1740
6P5N|1|5|G|1741
6P5N|1|5|A|1742
6P5N|1|5|A|1743
6P5N|1|5|U|1744
*
6P5N|1|5|A|1786
6P5N|1|5|A|1787
6P5N|1|5|A|1788
6P5N|1|5|C|1789
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- uL18
- Chain AI
- uL16
- Chain AT
- eL21
Coloring options: