IL_6P5N_177

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6P5N|1|5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_177 not in the Motif Atlas

Homologous match to IL_5TBW_069

Geometric discrepancy: 0.1378

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6P5N|1|5|C|2613
6P5N|1|5|C|2614
*
6P5N|1|5|G|2724
6P5N|1|5|A|2725
6P5N|1|5|G|2726

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain Ag

eL34