IL_6P5N_179

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6P5N|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_179 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.264

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6P5N|1|5|C|2646
6P5N|1|5|A|2647
6P5N|1|5|G|2648
*
6P5N|1|5|C|2685
6P5N|1|5|G|2686
6P5N|1|5|U|2687
6P5N|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Ag

eL34