IL_6P5N_219
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 6P5N|1|5|G|4522, 6P5N|1|5|A|4523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_219 not in the Motif Atlas
- Geometric match to IL_5TBW_108
- Geometric discrepancy: 0.0924
- The information below is about IL_5TBW_108
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6P5N|1|5|C|4456
6P5N|1|5|U|4457
6P5N|1|5|C|4458
*
6P5N|1|5|G|4520
6P5N|1|5|U|4521
6P5N|1|5|G|4522
6P5N|1|5|A|4523
6P5N|1|5|G|4524
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AV
- uL14
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
Coloring options: